ata_cal

This function calculates the log2 ratio of each value in a data frame
to its corresponding row mean. Zero values are preserved as zeros in the output.

Provides tools for analyzing metabolic pathway completeness, abundance, and transcripts
using KEGG Orthology (KO) data from (meta)genomic and (meta)transcriptomic studies.
Supports both completeness (presence/absence) and abundance-weighted analyses.
Includes built-in KEGG reference datasets. For more details see Li et al. (2023) <doi:10.1038/s41467-023-42193-7>.

Liuyang Li

mclink

Metabolic Pathway Completeness and Abundance Calculation

ata_cal function

<dl><dt>data</dt>
<dd>A data frame or matrix containing numerical values to be processed.
Rows represent features (e.g., KO terms) and columns represent samples.
Default is KO_Sample_table.</dd></dl>

Arguments

Calculate Log2 Ratio of Sample Values to Row Means — ata_cal

<dl>

<dt>data</dt>
<dd>A data frame or matrix containing numerical values to be processed.
Rows represent features (e.g., KO terms) and columns represent samples.
Default is KO_Sample_table.</dd>

</dl>

ata_cal: Calculate Log2 Ratio of Sample Values to Row Means

Description

Usage

Value

Arguments