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mclust (version 3.5)

Model-Based Clustering / Normal Mixture Modeling

Description

Model-based clustering and normal mixture modeling including Bayesian regularization

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Version

Install

install.packages('mclust')

Monthly Downloads

74,509

Version

3.5

License

GPL (>= 2)

Maintainer

Luca Scrucca

Last Published

July 22nd, 2012

Functions in mclust (3.5)

chevron

Simulated minefield data
partuniq

Classifies Data According to Unique Observations
mclustBIC

BIC for Model-Based Clustering
hypvol

Aproximate Hypervolume for Multivariate Data
emE

EM algorithm starting with E-step for a parameterized Gaussian mixture model.
bic

BIC for Parameterized Gaussian Mixture Models
mclustModelNames

MCLUST Model Names
uncerPlot

Uncertainty Plot for Model-Based Clustering
summary.mclustBIC

Summary Function for model-based clustering.
mapClass

Correspondence between classifications.
coordProj

Coordinate projections of multidimensional data modeled by an MVN mixture.
cross

Simulated Cross Data
surfacePlot

Density or uncertainty surface for bivariate mixtures.
plot.mclustDA

Plotting method for MclustDA discriminant analysis.
mclustDA

MclustDA discriminant analysis.
meE

EM algorithm starting with M-step for a parameterized Gaussian mixture model.
cdensE

Component Density for a Parameterized MVN Mixture Model
mclust-internal

Internal MCLUST functions
partconv

Numeric Encoding of a Partitioning
hcE

Model-based Hierarchical Clustering
hclass

Classifications from Hierarchical Agglomeration
densityMclust

Density Estimation via Model-Based Clustering
mclustDAtest

MclustDA Testing
Mclust

Model-Based Clustering
plot.mclustBIC

BIC Plot
sigma2decomp

Convert mixture component covariances to decomposition form.
priorControl

Conjugate Prior for Gaussian Mixtures.
decomp2sigma

Convert mixture component covariances to matrix form.
sim

Simulate from Parameterized MVN Mixture Models
cdens

Component Density for Parameterized MVN Mixture Models
diabetes

Diabetes data
mstepE

M-step for a parameterized Gaussian mixture model.
imputeData

Missing Data Imputation via the mix package
emControl

Set control values for use with the EM algorithm.
nVarParams

Number of Variance Parameters in Gaussian Mixture Models
dens

Density for Parameterized MVN Mixtures
classError

Classification error.
adjustedRandIndex

Adjusted Rand Index
mvnX

Univariate or Multivariate Normal Fit
em

EM algorithm starting with E-step for parameterized Gaussian mixture models.
defaultPrior

Default conjugate prior for Gaussian mixtures.
summary.mclustDAtest

Classification and posterior probability from mclustDAtest.
me

EM algorithm starting with M-step for parameterized MVN mixture models.
clPairs

Pairwise Scatter Plots showing Classification
Defaults.Mclust

List of values controlling defaults for some MCLUST functions.
imputePairs

Pairwise Scatter Plots showing Missing Data Imputations
mclustModel

Best model based on BIC.
mstep

M-step for parameterized Gaussian mixture models.
simE

Simulate from a Parameterized MVN Mixture Model
plot.Mclust

Plot Model-Based Clustering Results
mclust2Dplot

Plot two-dimensional data modelled by an MVN mixture.
mvn

Univariate or Multivariate Normal Fit
hc

Model-based Hierarchical Clustering
wreath

Data Simulated from a 14-Component Mixture
bicEMtrain

Select models in discriminant analysis using BIC
unmap

Indicator Variables given Classification
estepE

E-step in the EM algorithm for a parameterized Gaussian mixture model.
cv1EMtrain

Select discriminant models using cross validation
mclustOptions

Set default values for use with MCLUST.
mclust1Dplot

Plot one-dimensional data modeled by an MVN mixture.
mclustDAtrain

MclustDA Training
plot.densityMclust

Plot Univariate Mclust Density
randProj

Random projections of multidimensional data modeled by an MVN mixture.
summary.mclustModel

Summary Function for MCLUST Models
summary.mclustDAtrain

Models and classifications from mclustDAtrain
map

Classification given Probabilities
estep

E-step for parameterized Gaussian mixture models.
mclustVariance

Template for variance specification for parameterized Gaussian mixture models.
plot.mclustDAtrain

Plot mclustDA training models.