mclustAddons (version 0.10)

plot.densityMclustBounded: Plotting method for model-based mixture density estimation for bounded data

Description

Plots for mclustDensityBounded objects.

Usage

# S3 method for densityMclustBounded
plot(x, what = c("BIC", "density", "diagnostic"), data = NULL, ...)

Value

No return value, called for side effects.

Arguments

x

An object of class 'densityMclustBounded' obtained from a call to densityMclustBounded().

what

The type of graph requested:

• "BIC" for a plot of BIC values for the estimated models versus the number of components.

• "density" for a plot of estimated density; if data is also provided the density is plotted over the given data points.

• "diagnostic" for diagnostic plots (only available for the one-dimensional case).

data

Optional data points.

...

Further available arguments:

• For 1-dimensional data:
  hist.col = "lightgrey", hist.border = "white", breaks = "Sturges"

• For 2-dimensional data:
  type = c("contour", "hdr", "image", "persp"), transformation = c("none", "log", "sqrt")}, grid = 100, nlevels = 11, levels = NULL, prob = c(0.25, 0.5, 0.75), col = grey(0.6), color.palette = blue2grey.colors, points.col = 1, points.cex = 0.8, points.pch = 1

• For \(d > 2\)-dimensional data:
  type = c("contour", "hdr"), gap = 0.2, grid = 100, nlevels = 11, levels = NULL, prob = c(0.25, 0.5, 0.75), col = grey(0.6), color.palette = blue2grey.colors, code{points.col = 1, points.cex = 0.8, points.pch = 1

Author

Luca Scrucca

References

Scrucca L. (2019) A transformation-based approach to Gaussian mixture density estimation for bounded data. Biometrical Journal, 61:4, 873–888. tools:::Rd_expr_doi("doi:10.1002/bimj.201800174")

See Also

densityMclustBounded(), predict.densityMclustBounded().

Examples

# \donttest{
# univariate case with lower bound
x <- rchisq(200, 3)
dens <- densityMclustBounded(x, lbound = 0)
plot(dens, what = "BIC")
plot(dens, what = "density", data = x, breaks = 15)

# univariate case with lower & upper bound
x <- rbeta(200, 5, 1.5)
dens <- densityMclustBounded(x, lbound = 0, ubound = 1)
plot(dens, what = "BIC")
plot(dens, what = "density", data = x, breaks = 9)

# bivariate case with lower bounds
x1 <- rchisq(200, 3)
x2 <- 0.5*x1 + sqrt(1-0.5^2)*rchisq(200, 5)
x <- cbind(x1, x2)
dens <- densityMclustBounded(x, lbound = c(0,0))
plot(dens, what = "density")
plot(dens, what = "density", data = x)
plot(dens, what = "density", type = "hdr")
plot(dens, what = "density", type = "persp")
# }