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mdgsa (version 1.4.2)
Multi Dimensional Gene Set Analysis.
Description
Functions to preform a Gene Set Analysis in several genomic dimensions. Including methods for miRNAs.
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Version
1.4.2
1.4.0
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Version
1.4.2
License
GPL
Issues
1
Pull Requests
0
Stars
3
Forks
2
Repository
https://github.com/dmontaner/mdgsa
Homepage
http://www.dmontaner.com
Maintainer
David Montaner
Last Published
September 26th, 2013
Functions in mdgsa (1.4.2)
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annotList2mat
Convert an annotation list into an annotation matrix.
getGOnames
Get Gene Ontology names
splitOntologies
Split an annotation list of GO terms by ontologies.
getKEGGnames
Get KEGG names
goLeaves
Keep just leaf nodes from the Gene Ontology DAG.
mdPat
Multi-Dimensional Gene Set Analysis Pattern Classification.
annotFilter
Checks and filters an annotation list.
annotMat2list
Convert an annotation matrix into an annotation list.
transferIndex
Transfer a ranking index from regulatory elements, such as miRNAs, to genes.
indexTransform
Transform ranking index distribution.
uvPat
Uni-Variate Gene Set Analysis Pattern Classification.
pval2index
Transform p-values in into a ranking index.
mdGsa
Multi-Dimensional Gene Set Analysis.
propagateGO
Propagate Gene Ontology annotation.
revList
Revert an annotation list.
getOntology
Get GO term Ontology
uvSignif
Filter significant terms in the univariate gene set analysis.
plotMdGsa
Plot Multi-Dimensional Gene Set
uvGsa
Uni-Variate Gene Set Analysis.