wheat_16S

<p>The dataset wheat_16S is structured with microtable class for the demonstration of examples.</p>

object

microtable

Two pipelines are provided to study microbial turnover along a gradient, including the beta diversity and microbial abundance change. The 'betaturn' class consists of the steps of community dissimilarity matrix generation, matrix conversion, differential test and visualization. The workflow of 'taxaturn' class includes the taxonomic abundance calculation, abundance transformation, abundance change summary, statistical analysis and visualization. Multiple statistical approaches can contribute to the analysis of microbial turnover.

Chi Liu

mecoturn

Decipher Microbial Turnover along a Gradient

Xiangzhen Li

Minjie Yao

wheat_16S function

Format

The example dataset in the mecoturn package — wheat_16S

The example dataset in the mecoturn package

wheat_16S: The example dataset in the mecoturn package

Description

Usage

Arguments

Format

Details