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medfate (version 1.1.0)

Mediterranean Forest Simulation

Description

Functions to simulate Mediterranean forest functioning and dynamics using cohort-based description of vegetation [De Caceres et al. (2015) ; De Caceres et al. (2021) ].

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Version

Install

install.packages('medfate')

Monthly Downloads

429

Version

1.1.0

License

GPL (>= 2)

Maintainer

Miquel Caceres

Last Published

November 5th, 2020

Functions in medfate (1.1.0)

SFM_metric

Standard fuel models (Albini 1976, Scott & Burgan 2005)
SpParams

Data tables with species parameter values for Mediterranean and US
biophysics

Physical and biophysical utility functions
Vertical profiles

Vertical profiles
examplemeteo

Example daily meteorology data
extractSubdaily

Extracts subdaily output
defaultSoilParams

Default soil parameters
exampleforest

Example forest stands
defaultControl

Default control parameters for models
carbon

Carbon-related functions
conductancefunctions

Hydraulic confuctance functions
growth

Forest growth
forest_mapWoodyTables

Map forest plot data
modelInput

Input for simulation models
fire_behaviour

Fire behaviour functions
forest

Forest description
supplyfunctions

Hydraulic supply functions
scalingconductance

Scaling from conductivity to conductance
modifySpParams

Modify species/cohort parameters
tissuemoisture

Tissue moisture functions
photo

Photosynthesis submodel functions
pheno_updateLeaves

Leaf phenology
hydrology_soilWaterInputs

Soil water processes
light

Light extinction and absortion functions
plot.spwb_day

Plots simulation results for one day
soil texture and hydraulics

Soil texture and hydraulics
soil hydrology

Soil infiltration and bare soil evaporation
root

Root functions
resetInputs

Reset simulation inputs
hydrology_rainInterception

Rainfall interception
soilgridsParams

SoilGrids soil description fetcher
Species values

Species description functions
fuel_properties

Fuel stratification and fuel characteristics
Forest manipulation

Forest utility functions
Plant values

Plant description functions
spwb_waterUseEfficiency

Water use efficiency
spwb_validation

Validation of soil-plant water balance simulations
soil thermodynamics

Soil thermodynamic functions
spwb_maximumTranspirationRatioPlot

Maximum transpiration vs. LAI
spwb_resistances

Soil-plant resistances
spwb

Soil-plant water balance
spwb_stress

Drought stress indices
spwb_sensitivity

Sensitivity analysis for soil plant water balance simulations
plot.spwb

Displays simulation results
spwb_day

Single day simulation
Stand values

Stand values
soil

Soil initialization
transpiration

Transpiration submodel functions
spwb_ldrCalibration

Calibration of root distribution
spwb_ldrOptimization

Optimization of root distribution