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medfate (version 2.2.3)

Mediterranean Forest Simulation

Description

Functions to simulate Mediterranean forest functioning and dynamics using cohort-based description of vegetation [De Caceres et al. (2015) ; De Caceres et al. (2021) ].

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Version

Install

install.packages('medfate')

Monthly Downloads

429

Version

2.2.3

License

GPL (>= 2)

Issues

2

Pull Requests

0

Stars

12

Forks

8

Maintainer

Miquel Caceres

Last Published

June 18th, 2021

Functions in medfate (2.2.3)

SFM_metric

Standard fuel models (Albini 1976, Scott & Burgan 2005)
defaultControl

Default control parameters for models
carbon

Carbon-related functions
fire_behaviour

Fire behaviour functions
forest

Forest description
fuel_properties

Fuel stratification and fuel characteristics
fordyn

Forest dynamics
Vertical profiles

Vertical profiles
defaultSoilParams

Default soil parameters
Forest manipulation

Forest utility functions
biophysics

Physical and biophysical utility functions
light

Radiation transfer functions
Mortality

Mortality
evaluation

Evaluation of simulations results
optimization

Multiple model runs and function factories for optimization routines
modelInput

Input for simulation models
tissuemoisture

Tissue moisture functions
modifyParams

Modify parameters
root

Root functions
hydrology_rainInterception

Rainfall interception
extractSubdaily

Extracts subdaily output
supplyfunctions

Hydraulic supply functions
exampleobs

Example observed data
pheno_updateLeaves

Leaf phenology
soil

Soil initialization
soil texture and hydraulics

Soil texture and hydraulics
growth

Forest growth
conductancefunctions

Hydraulic confuctance functions
spwb_ldrOptimization

Optimization of root distribution
soil thermodynamics

Soil thermodynamic functions
spwb_resistances

Soil-plant resistances
resetInputs

Reset simulation inputs
soil hydrology

Soil infiltration and bare soil evaporation
hydrology_soilWaterInputs

Soil water processes
spwb_stress

Drought stress indices
plot.spwb_day

Plots simulation results for one day
Species values

Species description functions
photo

Photosynthesis submodel functions
transp_stomatalregulation

Stomatal regulation
Wind models

Models for canopy turbulence
spwb

Soil-plant water balance
transp_modes

Transpiration modes
transp_maximumTranspirationModel

Maximum transpiration vs. LAI
scalingconductance

Scaling from conductivity to conductance
examplemeteo

Example daily meteorology data
Stand values

Stand values
spwb_sensitivity

Sensitivity analysis for soil plant water balance simulations
exampleforest

Example forest stands
Plant values

Plant description functions
spwb_waterUseEfficiency

Water use efficiency
Wood formation

Wood formation
plot.spwb

Displays simulation results
spwb_ldrCalibration

Calibration of root distribution
spwb_day

Single day simulation
SpParams

Data tables with species parameter values for Mediterranean and US