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medfate (version 2.3.7)

Mediterranean Forest Simulation

Description

Functions to simulate Mediterranean forest functioning and dynamics using cohort-based description of vegetation [De Caceres et al. (2015) ; De Caceres et al. (2021) ].

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Version

Install

install.packages('medfate')

Monthly Downloads

429

Version

2.3.7

License

GPL (>= 2)

Maintainer

Miquel Caceres

Last Published

December 16th, 2021

Functions in medfate (2.3.7)

Parameter means

Parameter average values
Vertical profiles

Vertical profiles
exampleforest

Example forest stands
evaluation

Evaluation of simulations results
biophysics

Physical and biophysical utility functions
carbon

Carbon-related functions
defaultSoilParams

Default soil parameters
examplemeteo

Example daily meteorology data
defaultControl

Default simulation control parameters for models
exampleobs

Example observed data
extractSubdaily

Extracts subdaily output
fire_behaviour

Fire behaviour functions
SpParams

Data tables with species parameter definition and values for Mediterranean and US
SFM_metric

Standard fuel models (Albini 1976, Scott & Burgan 2005)
Forest manipulation

Forest utility functions
fuel_properties

Fuel stratification and fuel characteristics
supplyfunctions

Hydraulic supply functions
scalingconductance

Scaling from conductivity to conductance
hydrology_soilWaterInputs

Soil water processes
growth

Forest growth
conductancefunctions

Hydraulic confuctance functions
light

Radiation transfer functions
hydrology_rainInterception

Rainfall interception
modelInput

Input for simulation models
modifyParams

Modify parameters
photo

Photosynthesis submodel functions
Plant values

Plant description functions
plot.spwb_day

Plots simulation results for one day
plot.spwb

Plots simulation results
resetInputs

Reset simulation inputs
root

Root functions
forest

Forest description
fordyn

Forest dynamics
shinyplot

Shiny app with interactive plots
soil hydrology

Soil infiltration and bare soil evaporation
pheno_updateLeaves

Leaf phenology
optimization

Multiple model runs and function factories for optimization routines
spwb_sensitivity

Sensitivity analysis for soil plant water balance simulations
spwb_stress

Drought stress indices
spwb

Soil-plant water balance
Species values

Species description functions
spwb_day

Single day simulation
tissuemoisture

Tissue moisture functions
Mortality

Mortality
spwb_ldrCalibration

Calibration of root distribution
summary.spwb

Summarises simulation results
transp_maximumTranspirationModel

Maximum transpiration vs. LAI
transp_modes

Transpiration modes
soil

Soil initialization
spwb_ldrOptimization

Optimization of root distribution
Wind models

Models for canopy turbulence
spwb_resistances

Soil-plant resistances
transp_stomatalregulation

Stomatal regulation
Stand values

Stand values
spwb_waterUseEfficiency

Water use efficiency
Wood formation

Wood formation
soil thermodynamics

Soil thermodynamic functions
soil texture and hydraulics

Soil texture and hydraulics