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medfate (version 2.7.3)

Mediterranean Forest Simulation

Description

Functions to simulate Mediterranean forest functioning and dynamics using cohort-based description of vegetation [De Caceres et al. (2015) ; De Caceres et al. (2021) ].

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Version

Install

install.packages('medfate')

Monthly Downloads

429

Version

2.7.3

License

GPL (>= 2)

Maintainer

Miquel Caceres

Last Published

May 9th, 2022

Functions in medfate (2.7.3)

defaultManagementFunction

Default forest management actions
extractSubdaily

Extracts subdaily output
SpParams

Data tables with species parameter definition and values for Mediterranean and US
evaluation

Evaluation of simulations results
fire_behaviour

Fire behaviour functions
fordyn

Forest dynamics
SFM_metric

Standard fuel models (Albini 1976, Scott & Burgan 2005)
exampleforest

Example forest stands
Parameter means

Parameter average values
fireHazard

Fire hazard
Forest manipulation

Forest utility functions
forest

Forest description
Vertical profiles

Vertical profiles
conductancefunctions

Hydraulic confuctance functions
scalingconductance

Scaling from conductivity to conductance
examplemeteo

Example daily meteorology data
supplyfunctions

Hydraulic supply functions
hydrology_rainInterception

Rainfall interception
exampleobs

Example observed data
fuel_properties

Fuel stratification and fuel characteristics
growth

Forest growth
optimization

Multiple model runs and function factories for optimization routines
light

Radiation transfer functions
plot.spwb_day

Plots simulation results for one day
Mortality

Mortality
plot.spwb

Plots simulation results
pheno_updateLeaves

Leaf phenology
soil hydrology

Soil infiltration and bare soil evaporation
soil thermodynamics

Soil thermodynamic functions
soil texture and hydraulics

Soil texture and hydraulics
photo

Photosynthesis submodel functions
shinyplot

Shiny app with interactive plots
transp_stomatalregulation

Stomatal regulation
soil

Soil initialization
waterUseEfficiency

Water use efficiency
resetInputs

Reset simulation inputs
recruitment

Plant recruitment
resistances

Soil-plant resistances
root

Root functions
spwb_sensitivity

Sensitivity analysis for soil plant water balance simulations
Wind models

Models for canopy turbulence
spwb_ldrOptimization

Optimization of root distribution
hydrology_soilWaterInputs

Soil water processes
Stand values

Stand values
summary.spwb

Summarises simulation results
Wood formation

Wood formation
Plant values

Plant description functions
modelInput

Input for simulation models
plot.forest

Plot forest attributes
Species values

Species description functions
spwb_day

Single day simulation
spwb

Soil-plant water balance
modifyParams

Modify parameters
spwb_ldrCalibration

Calibration of root distribution
transp_maximumTranspirationModel

Maximum transpiration vs. LAI
tissuemoisture

Tissue moisture functions
transp_modes

Transpiration modes
carbon

Carbon-related functions
defaultSoilParams

Default soil parameters
droughtStress

Drought stress indices
biophysics

Physical and biophysical utility functions
defaultControl

Control parameters for simulation models