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medfate (version 2.9.3)

Mediterranean Forest Simulation

Description

Simulate Mediterranean forest functioning and dynamics using cohort-based description of vegetation [De Caceres et al. (2015) ; De Caceres et al. (2021) ].

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Version

Install

install.packages('medfate')

Monthly Downloads

429

Version

2.9.3

License

GPL (>= 2) | LGPL (>= 3)

Maintainer

Miquel Caceres

Last Published

March 11th, 2023

Functions in medfate (2.9.3)

SFM_metric

Standard fuel models (Albini 1976, Scott & Burgan 2005)
droughtStress

Drought stress indicators
carbon

Carbon-related functions
defaultManagementFunction

Default forest management actions
evaluation

Evaluation of simulations results
biophysics

Physical and biophysical utility functions
defaultControl

Control parameters for simulation models
defaultSoilParams

Default soil parameters
Parameter means

Parameter average values
SpParams

Data tables with species parameter definition and values for Mediterranean and US
exampleforest

Example forest stands
extractSubdaily

Extracts subdaily output
fuel_properties

Fuel stratification and fuel characteristics
fire_behaviour

Fire behaviour functions
forest_mergeTrees

Forest merge functions
fireHazard

Fire hazard
forest

Forest description
fordyn

Forest dynamics
exampleobs

Example observed data
examplemeteo

Example daily meteorology data
hydrology_verticalInputs

Soil vertical inputs
medfate-package

medfate: Mediterranean Forest Simulation
hydraulics_scalingconductance

Scaling from conductivity to conductance
hydraulics_supplyfunctions

Hydraulic supply functions
light

Radiation transfer functions
hydrology_erFactor

Rainfall interception
forest2aboveground

Input for simulation models
hydrology_soilEvaporationAmount

Soil infiltration, percolation and bare soil evaporation
hydraulics_conductancefunctions

Hydraulic confuctance functions
growth

Forest growth
mortality_dailyProbability

Mortality
pheno_updateLeaves

Leaf phenology
modifyParams

Modify parameters
photo

Photosynthesis submodel functions
plot.spwb

Plots simulation results
plant_values

Plant description functions
plot.spwb_day

Plots simulation results for one day
moisture

Tissue moisture functions
plot.forest

Plot forest attributes
optimization

Multiple model runs and function factories for optimization routines
shinyplot

Shiny app with interactive plots
resistances

Soil-plant resistances
soil_texture

Soil texture and hydraulics
root

Root functions
soil_thermodynamics

Soil thermodynamic functions
recruitment

Plant recruitment
resetInputs

Reset simulation inputs
species_values

Species description functions
spwb

Soil-plant water balance
soil

Soil initialization
growth_day

Single day simulation
spwb_ldrCalibration

Calibration of root distribution
transp_stomatalregulation

Stomatal regulation
spwb_ldrExploration

Optimization of root distribution
transp_transpirationSperry

Transpiration modes
summary.spwb

Summarize simulation results
stand_basalArea

Stand values
transp_maximumTranspirationModel

Maximum transpiration vs. LAI
vprofile_leafAreaDensity

Vertical profiles
spwb_sensitivity

Sensitivity analysis for soil plant water balance simulations
waterUseEfficiency

Water use efficiency
wind

Models for canopy turbulence
woodformation

Wood formation