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medfate (version 3.2.0)

Mediterranean Forest Simulation

Description

Simulate Mediterranean forest functioning and dynamics using cohort-based description of vegetation [De Caceres et al. (2015) ; De Caceres et al. (2021) ].

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Version

Install

install.packages('medfate')

Monthly Downloads

429

Version

3.2.0

License

GPL (>= 2) | LGPL (>= 3)

Maintainer

Miquel Caceres

Last Published

November 30th, 2023

Functions in medfate (3.2.0)

exampleforest

Example forest stands
forest_mergeTrees

Forest merge functions
forest

Forest description
fire_severity

Fire severity functions
extractSubdaily

Extracts subdaily output
fireHazard

Fire hazard
fire_behaviour

Fire behaviour functions
exampleobs

Example observed data
examplemeteo

Example daily meteorology data
fordyn

Forest dynamics
hydrology_verticalInputs

Soil vertical inputs
growth

Forest growth
hydraulics_scalingconductance

Scaling from conductivity to conductance
herb_values

Herbaceous description functions
hydraulics_conductancefunctions

Hydraulic confuctance functions
hydrology_erFactor

Rainfall interception
hydraulics_supplyfunctions

Hydraulic supply functions
hydrology_soilEvaporationAmount

Soil infiltration, percolation and bare soil evaporation
fuel_properties

Fuel stratification and fuel characteristics
light

Radiation transfer functions
optimization

Multiple model runs and function factories for optimization routines
mortality_dailyProbability

Mortality
photo

Photosynthesis submodel functions
modifyParams

Modify parameters
medfate-package

medfate: Mediterranean Forest Simulation
plot.forest

Plot forest attributes
forest2aboveground

Input for simulation models
plant_values

Woody plant cohort description functions
pheno_updateLeaves

Leaf phenology
moisture

Tissue moisture functions
shinyplot

Shiny app with interactive plots
resistances

Soil-plant resistances
root

Root functions
plot.spwb

Plots simulation results
regeneration

Plant regeneration
plot.spwb_day

Plots simulation results for one day
soil_thermodynamics

Soil thermodynamic functions
soil

Soil initialization
soil_texture

Soil texture and hydraulics
resetInputs

Reset simulation inputs
species_values

Species description functions
transp_maximumTranspirationModel

Maximum transpiration vs. LAI
vprofile_leafAreaDensity

Vertical profiles
spwb

Soil-plant water balance
transp_stomatalregulation

Stomatal regulation
stand_basalArea

Stand values
sureau_ecos

Sureau-ECOS inner functions for testing only
transp_transpirationSperry

Transpiration modes
growth_day

Single-day simulation
summary.spwb

Summarize simulation results
woodformation

Wood formation
waterUseEfficiency

Water use efficiency
wind

Models for canopy turbulence
biophysics

Physical and biophysical utility functions
evaluation

Evaluation of simulations results
droughtStress

Drought stress indicators
defaultManagementFunction

Default forest management actions
defaultControl

Control parameters for simulation models
defaultSoilParams

Default soil parameters
carbon

Carbon-related functions
Parameter means

Parameter average values
SFM_metric

Standard fuel models (Albini 1976, Scott & Burgan 2005)
SpParams

Data tables with species parameter definition and values for Mediterranean and US