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mefa (version 3.2-4)

Multivariate Data Handling in Ecology and Biogeography

Description

A framework package aimed to provide standardized computational environment for specialist work via object classes to represent the data coded by samples, taxa and segments (i.e. subpopulations, repeated measures). It supports easy processing of the data along with cross tabulation and relational data tables for samples and taxa. An object of class `mefa' is a project specific compendium of the data and can be easily used in further analyses. Methods are provided for extraction, aggregation, conversion, plotting, summary and reporting of `mefa' objects. Reports can be generated in plain text or LaTeX format. Vignette contains worked examples.

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Version

Install

install.packages('mefa')

Monthly Downloads

582

Version

3.2-4

License

GPL-2

Maintainer

Peter Solymos

Last Published

October 7th, 2013

Functions in mefa (3.2-4)

aoplot

Abundance-Occupancy Plot
as.mefa

Conversion Among Various Object Classes
mefadocs

Display Package Documentation
aggregate.mefa

Extract and Aggregate Objects of Class 'mefa'
image.dist

Image Plot of a 'dist' Object
mefa

Create an Object of Class 'mefa'
dolina

The Dolina Dataset
stcs

Create an Object of Class 'stcs'
mefalogo

Schematic Plot of an Object of Class 'mefa'
mat2list

Matrix Manipulation Tools
label

Assign Label to an Object and Return It
plot.mefa

Plotting Methods for Object of Class 'mefa' and 'stcs'
fill.na

Replace Values with Nearest Above Values
mefaTables

Subsetting and Ordering of Related Data Tables
melt

Melt (Convert) an Object of Class 'mefa' Into 'stcs'
as.data.frame.dist

Manipulation Tools for Class 'dist'
qvector

Ordinal Transformation of a Vector
rep.data.frame

Inflate (repeat) a Data Frame
mefaCheck

Check and Compare Object(s) of Class 'mefa'
mefaCrosstab

Cross Tabulate an Object of Class 'stcs'
mefaNestedless

Make Non-Nested 'mefa' Object
report.mefa

Write Report of an Object of Class 'mefa' into File
mefaweb

Open 'mefa' Website