memoria (version 1.0.0)

plotExperiment: Plots the output of runExperiment.

Description

It takes the output of runExperiment, and generates plots of ecological memory patterns for a large number of simulated pollen curves.

Usage

plotExperiment(
 experiment.output = NULL,
 parameters.file = NULL,
 experiment.title = NULL,
 sampling.names = NULL,
 legend.position = "bottom",
 R2 = NULL,
 filename = NULL,
 strip.text.size = 12,
 axis.x.text.size = 8,
 axis.y.text.size = 12,
 axis.x.title.size = 14,
 axis.y.title.size = 14,
 title.size = 18,
 caption = ""
 )

Arguments

experiment.output

list, output of runExperiment.

parameters.file

dataframe of simulation parameters.

experiment.title

character string, title of the plot.

sampling.names

vector of character strings with the names of the columns used in the argument simulations.file of runExperiment. If NULL, no pdf plot is produced.

legend.position

legend position in ggplot object. One of "bottom", "right", "none".

R2

boolean. If TRUE, pseudo R-squared values are printed along with the traits of the virtual taxa.

filename

character string, path and name (without extension) of the output pdf file.

strip.text.size

size of the facet's labels.

axis.x.text.size

size of the labels in x axis.

axis.y.text.size

size of the labels in y axis.

axis.x.title.size

size of the title of the x axis.

axis.y.title.size

size of the title of the y axis.

title.size

size of the plot title.

caption

character string, caption of the output figure.

Value

A ggplot2 object.

See Also

plotMemory, runExperiment