plotExperiment

Takes the output of <code>runExperiment</code>, and generates plots of ecological memory patterns for a large number of simulated pollen curves.

Quantifies ecological memory in long time-series using Random Forest models ('Benito', 'Gil-Romera', and 'Birks' 2019 <doi:10.1111/ecog.04772>) fitted with 'ranger' (Wright and Ziegler 2017 <doi:10.18637/jss.v077.i01>). Ecological memory is assessed by modeling a response variable as a function of lagged predictors, distinguishing endogenous memory (lagged response) from exogenous memory (lagged environmental drivers). Designed for palaeoecological datasets and simulated pollen curves from 'virtualPollen', but applicable to any long time-series with environmental drivers and a biotic response.

Blas M. Benito

memoria

Quantifying Ecological Memory in Palaeoecological Datasets and
Other Long Time-Series

plotExperiment function

<dl><dt>experiment.output</dt>
<dd>list, output of <code>runExperiment</code>. Default: <code>NULL</code>.</dd>
<dt>parameters.file</dt>
<dd>dataframe of simulation parameters. Default: <code>NULL</code>.</dd>
<dt>ribbon</dt>
<dd>logical, switches plotting of confidence intervals on (TRUE) and off (FALSE). Default: <code>FALSE</code>.</dd></dl>

Arguments

Blas M. Benito &lt;blasbenito@gmail.com&gt;

Author

Plots the output of  runExperiment. — plotExperiment

<dl>

<dt>experiment.output</dt>
<dd>list, output of <code>runExperiment</code>. Default: <code>NULL</code>.</dd>


<dt>parameters.file</dt>
<dd>dataframe of simulation parameters. Default: <code>NULL</code>.</dd>


<dt>ribbon</dt>
<dd>logical, switches plotting of confidence intervals on (TRUE) and off (FALSE). Default: <code>FALSE</code>.</dd>

</dl>

plotExperiment: Plots the output of `runExperiment`.

Description

Usage

Value

Arguments

Author

See Also