CheckIncidence

The function CheckIncidence check and reformat the matrix of incidence.

Provides functions to perform all steps of genome-wide
association meta-analysis for studying Genotype x Environment
interactions, from collecting the data to the manhattan plot.  The
procedure accounts for the potential correlation between studies. In
addition to the Fixed and Random models, one can investigate the
relationship between QTL effects and some qualitative or quantitative
covariate via the test of contrast and the meta-regression,
respectively.  The methodology is available from: (De Walsche, A., et
al. (2025) \doi{10.1371/journal.pgen.1011553}).

Annaïg De Walsche

metaGE

Meta-Analysis for Detecting Genotype x Environment Associations

Tristan Mary-Huard

CheckIncidence function

<dl><dt>Incidence</dt>
<dd>A matrix of incidence, as obtained from <code>metaGE.incidence()</code>.</dd>
<dt>IncidenceName</dt>
<dd>The name of the incidence.</dd></dl>

Arguments

Check and reformat the matrix of incidence — CheckIncidence

<dl>

<dt>Incidence</dt>
<dd>A matrix of incidence, as obtained from <code>metaGE.incidence()</code>.</dd>


<dt>IncidenceName</dt>
<dd>The name of the incidence.</dd>

</dl>

CheckIncidence: Check and reformat the matrix of incidence

Description

Usage

Value

Arguments