GetH0Items

This function give the index of the markers which seems not significant (under H0)

Provides functions to perform all steps of genome-wide
association meta-analysis for studying Genotype x Environment
interactions, from collecting the data to the manhattan plot.  The
procedure accounts for the potential correlation between studies. In
addition to the Fixed and Random models, one can investigate the
relationship between QTL effects and some qualitative or quantitative
covariate via the test of contrast and the meta-regression,
respectively.  The methodology is available from: (De Walsche, A., et
al. (2025) \doi{10.1371/journal.pgen.1011553}).

Annaïg De Walsche

metaGE

Meta-Analysis for Detecting Genotype x Environment Associations

Tristan Mary-Huard

GetH0Items function

<dl><dt>Zmat</dt>
<dd>A matrix containing the Zscore (in rows) for each environment (in columns)</dd>
<dt>Threshold</dt>
<dd>Threshold on posteriors (to be H1) to filter markers for correlation computation (0.6 by default)</dd>
<dt>plotting</dt>
<dd>A boolean saying to plot or not (FALSE by default)</dd>
<dt>Cores</dt>
<dd>The number of cores to used, optional. By default, availableCores()-1 cores is used.</dd></dl>

Arguments

GetH0Items — GetH0Items

<dl>

<dt>Zmat</dt>
<dd>A matrix containing the Zscore (in rows) for each environment (in columns)</dd>


<dt>Threshold</dt>
<dd>Threshold on posteriors (to be H1) to filter markers for correlation computation (0.6 by default)</dd>


<dt>plotting</dt>
<dd>A boolean saying to plot or not (FALSE by default)</dd>


<dt>Cores</dt>
<dd>The number of cores to used, optional. By default, availableCores()-1 cores is used.</dd>

</dl>

GetH0Items: GetH0Items

Description

Usage

Value

Arguments