MakeQQplot

The function MakeQQplot displays the QQplot of the -log10(pvalues).

Provides functions to perform all steps of genome-wide
association meta-analysis for studying Genotype x Environment
interactions, from collecting the data to the manhattan plot.  The
procedure accounts for the potential correlation between studies. In
addition to the Fixed and Random models, one can investigate the
relationship between QTL effects and some qualitative or quantitative
covariate via the test of contrast and the meta-regression,
respectively.  The methodology is available from: (De Walsche, A., et
al. (2025) \doi{10.1371/journal.pgen.1011553}).

Annaïg De Walsche

metaGE

Meta-Analysis for Detecting Genotype x Environment Associations

Tristan Mary-Huard

MakeQQplot function

<dl><dt>Pvalues</dt>
<dd>A vector containing pvalues.</dd>
<dt>Name</dt>
<dd>A name of the corresponding test. (optional)</dd>
<dt>Xrange</dt>
<dd>A range for the x axis. (optional)</dd>
<dt>Yrange</dt>
<dd>A range for the y axis. (optional)</dd></dl>

Arguments

Drawing a QQplot — MakeQQplot

<dl>

<dt>Pvalues</dt>
<dd>A vector containing pvalues.</dd>


<dt>Name</dt>
<dd>A name of the corresponding test. (optional)</dd>


<dt>Xrange</dt>
<dd>A range for the x axis. (optional)</dd>


<dt>Yrange</dt>
<dd>A range for the y axis. (optional)</dd>

</dl>

MakeQQplot: Drawing a QQplot

Description

Usage

Arguments