metaMS (version 1.8.0)

metaSetting-methods: Get or set values in metaMSsettings objects

Description

Accessor function for metaMSsettings objects, allowing to get or set values from individual slots.

Methods

signature(object = "metaMSsettings")

Get or set values from individual slots in a metaMSsettings objects.

See Also

FEMsettings

Examples

## Not run: 
# ## The three sets of settings are created as follows:
# Synapt.NP <- metaMSsettings(protocolName = "Synapt.QTOF.NP",
#                             chrom = "LC",
#                             PeakPicking = list(
#                               method = "matchedFilter",
#                               step = 0.05,
#                               fwhm = 20,
#                               snthresh = 4,
#                               max = 50),
#                             Alignment = list(
#                               min.class.fraction = .3,
#                               min.class.size = 3,
#                               mzwid = 0.1,
#                               bws = c(130, 10),
#                               missingratio = 0.2,
#                               extraratio = 0.1,
#                               retcormethod = "linear",
#                               retcorfamily = "symmetric",            
#                               fillPeaks = TRUE),
#                             CAMERA = list(
#                               perfwhm = 0.6,
#                               cor_eic_th = 0.7,
#                               ppm= 5))
# metaSetting(Synapt.NP, "match2DB") <- list(
#             rtdiff = 1.5,
#             rtval = .1,
#             mzdiff = 0.005,
#             ppm = 5,
#             minfeat = 2)
# metaSetting(Synapt.NP, "DBconstruction") <- list(
#             minfeat = 3,
#             rttol = .3,
#             mztol = .01)
# ## End(Not run)