metaX (version 1.4.0)

dataClean: dataClean

Description

dataClean

Usage

dataClean(para, valueID = "value", sd.factor = 3, snr = 1, ...)

Arguments

para

A metaXpara object.

valueID

The name of the column used

sd.factor

The factor used to filter peak based on SD

snr

The threshold to filter peak

...

Other argument

Value

A metaXpara object.

Examples

para <- new("metaXpara")
pfile <- system.file("extdata/MTBLS79.txt",package = "metaX")
sfile <- system.file("extdata/MTBLS79_sampleList.txt",package = "metaX")
rawPeaks(para) <- read.delim(pfile,check.names = FALSE)
sampleListFile(para) <- sfile
para <- reSetPeaksData(para)
p <- dataClean(para)