metaboGSE (version 1.2.5)

bestRanking: Identify the best ranking

Description

This function computes the performance indices of different rankings compared to the random ranking for gene removal and identify the best ranking

Usage

bestRanking(fns)

Arguments

fns

List of fitness objects.

Value

The performance indices for all rankings and the best ranking.

Examples

# NOT RUN {
data(Ec_core)
mod <- rescue(Ec_core, target=0.1)
mod.weight <- changeObjFunc(mod$rescue, react=rownames(mod$coef), obj_coef=mod$coef)
ranks <- list(
   rep.1=data.frame(
       expr=setNames(rnorm(length(sybil::allGenes(mod.weight)), mean=5, sd=4),
           sybil::allGenes(mod.weight))),
   rep.2=data.frame(
       expr=setNames(rnorm(length(sybil::allGenes(mod.weight)), mean=5, sd=4.1),
           sybil::allGenes(mod.weight))))
fn <- fitness(model=mod.weight, ranks=ranks, step=200, draw.num=1)
bestRanking(list(fn))
# }