metaboGSE (version 1.2.5)

simulateSubmnet: Plot fitness of submodels built by gene removal in a condition

Description

This function plots the fitness of submodels built by gene removal in a condition with different rankings.

Usage

simulateSubmnet(
  sgd,
  mc.cores = 1,
  ranks.name = NULL,
  njt = NULL,
  cols = NULL,
  ltys = NULL
)

Arguments

sgd

An object of class scoreGeneDel.

mc.cores

The number of cores to use (at least 1), i.e. at most how many child processes will be run simultaneously. Default: 1.

ranks.name

Names of gene expression ranking. Default: NULL.

njt

An object of class phylo for colored plot of fitness weighting schema resulting from weightReacts. Default: NULL.

cols

Colors for conditions. Default: rainbow colors.

ltys

Line types for conditions. Default: incrementing line types in R.

Examples

# NOT RUN {
data(yarliSubmnets)
# }
# NOT RUN {
simulateSubmnet(yarliSubmnets$UH)
# }