get_data_dir

Returns the path to the directory storing the example files shipped with
metabodecon.
Deprecated since metabodecon v1.2.0. Please use <code>datadir()</code> instead. See
examples below for usage.
<a href="https://lifecycle.r-lib.org/articles/stages.html#deprecated"><img src="figures/lifecycle-deprecated.svg?package=metabodecon&version=1.6.2" alt="[Deprecated]"></a>

A framework for deconvolution, alignment and postprocessing
of 1-dimensional (1d) nuclear magnetic resonance (NMR) spectra, resulting in
a data matrix of aligned signal integrals. The deconvolution part uses the
algorithm described in Koh et al. (2009) <doi:10.1016/j.jmr.2009.09.003>.
The alignment part is based on functions from the 'speaq' package, described
in Beirnaert et al. (2018) <doi:10.1371/journal.pcbi.1006018> and Vu et al.
(2011) <doi:10.1186/1471-2105-12-405>. A detailed description and evaluation
of an early version of the package, 'MetaboDecon1D v0.2.2', can be found in
Haeckl et al. (2021) <doi:10.3390/metabo11070452>.

Tobias Schmidt

metabodecon

Deconvolution and Alignment of 1d NMR Spectra

Martina Haeckl

Yanren Linda Hu

Wolfram Gronwald

get_data_dir function

<dl><dt>dataset_name</dt>
<dd>Either <code>""</code>, <code>"test"</code>, <code>"blood"</code> or <code>"urine"</code>.</dd>
<dt>warn</dt>
<dd>Whether to print a warning message when the example folders do
not yet exist, i.e. <code>download_example_datasets()</code> has not been called yet.</dd></dl>

Arguments

2024-2025 Tobias Schmidt: initial version.

Author

Returns the path to the directory storing the example files shipped with
metabodecon.
Deprecated since metabodecon v1.2.0. Please use <code>datadir()</code> instead. See
examples below for usage.
<a href='https://lifecycle.r-lib.org/articles/stages.html#deprecated'><img src='figures/lifecycle-deprecated.svg' alt='[Deprecated]' /></a>

Retrieve directory path of an example dataset — get_data_dir

<dl>

<dt>dataset_name</dt>
<dd>Either <code>""</code>, <code>"test"</code>, <code>"blood"</code> or <code>"urine"</code>.</dd>


<dt>warn</dt>
<dd>Whether to print a warning message when the example folders do
not yet exist, i.e. <code>download_example_datasets()</code> has not been called yet.</dd>

</dl>

get_data_dir: Retrieve directory path of an example dataset

Description

Usage

Value

Arguments

Author

See Also

Examples