metabodecon (version 1.6.2)

plot_triplets: Plot peak triplets for variable range

Description

Plots the peak triplets for each peak detected by MetaboDecon1D() and stores the plots as png at outdir.

Superseded by plot_spectrum() since metabodecon v1.2.0. Will be replaced with v2.

Usage

plot_triplets(
  deconv_result,
  x_range = c(),
  y_range = c(),
  out_dir = ".",
  ask = TRUE
)

Value

No return value, called for side effect of plotting.

Arguments

deconv_result

Saved result of the MetaboDecon1D() function

x_range

Row vector with two entries consisting of the ppm start and the ppm end value to scale the range of the x-axis (optional)

y_range

Row vector with two entries consisting of the ppm start and the ppm end value to scale the range of the y-axis (optional)

out_dir

Directory to save the png files (optional)

ask

Logical value to ask the user if the png files should be saved in the specified directory (optional)

Author

2020-2021 Martina Haeckl: initial version.
2024-2025 Tobias Schmidt: Minor updates to pass CRAN checks.

See Also

MetaboDecon1D(), calculate_lorentz_curves(), plot_lorentz_curves_save_as_png(), plot_spectrum_superposition_save_as_png()

Examples

sim <- metabodecon_file("bruker/sim_subset")
sim_decon <- generate_lorentz_curves_sim(sim)
png_dir <- tmpdir("sim_decon/pngs", create = TRUE)
plot_triplets(sim_decon, out_dir = png_dir, ask = FALSE)
dir(png_dir, full.names = TRUE)