its1_ex_data

0th

Percentile

Example of ITS1 fungal data

A dataset containing information from 170 Chytridiomycota ITS sequences from the ITS1 reference database.

Keywords
datasets
Usage
its1_ex_data
Format

An object of type taxmap

Aliases
  • its1_ex_data
Examples
## Not run: 
# 
# file_path <- system.file("extdata", "its1_chytridiomycota_hmm.fasta", package = "metacoder")
# sequences <- ape::read.FASTA(file_path)
# its1_ex_data <- extract_taxonomy(sequences,
#                                  regex = "^(.*)\\|(.*)\\|tax_id:(.*)\\|(.*)$",
#                                  key = c("obs_id", taxon_name = "taxon_info",
#                                          "taxon_id", description = "obs_info"),
#                                  database = "ncbi")
# ## End(Not run)

Documentation reproduced from package metacoder, version 0.1.2, License: GPL-2 | GPL-3

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