rdp_ex_data

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Example of RDP Archea data

A dataset containing information from 400 Archaea 16S sequences from the RDP reference database.

Keywords
datasets
Usage
rdp_ex_data
Format

An object of type taxmap

Source

https://rdp.cme.msu.edu/

Aliases
  • rdp_ex_data
Examples
## Not run: 
# 
# file_path <- system.file("extdata", "rdp_current_Archaea_unaligned.fa", package = "metacoder")
# sequences <- ape::read.FASTA(file_path)
# rdp_ex_data <- extract_taxonomy(sequences,
#                                 regex = "^(.*?) (.*)\\tLineage=(.*)",
#                                 key = c(id = "obs_info", description = "obs_info", "class"),
#                                 class_regex = "(.+?);(.*?);",
#                                 class_key = c("name", "taxon_info"))
# ## End(Not run)

Documentation reproduced from package metacoder, version 0.1.2, License: GPL-2 | GPL-3

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