Arguments
seq_path
A character vector of length 1. The path to the fasta file containing reference
sequences to search for primer matches in.
primer_path
A character vector of length 1. The path to the file containing primer pairs
to match. The file should be whitespace-delimited with 3 columns: primer name, first primer
sequence, and second primer sequence.
mismatch
An integer vector of length 1. The percentage of mismatches allowed.
output_path
A character vector of length 1. Where the output of primersearch is saved.
program_path
A character vector of length 1. The location of the primersearch binary.
Ideally, it should be in your system's search path.
dont_run
If TRUE, the command is generated, but not executed. This could be useful if you
want to execute the command yourself.
...
Additional arguments are passed to primersearch
.