silva_ex_data

0th

Percentile

Example dataset from SILVA

https://www.arb-silva.de/

Keywords
datasets
Usage
silva_ex_data
Format

An object of type taxmap

Aliases
  • silva_ex_data
Examples
## Not run: 
# 
# file_path <- system.file("extdata", "silva_nr99.fasta", package = "metacoder")
# sequences <- ape::read.FASTA(file_path)
# silva_ex_data <- extract_taxonomy(sequences,
#                                   regex = "^(.*?) (.*)$",
#                                   key = c(id = "obs_info", "class"),
#                                   class_sep = ";")
# ## End(Not run)

Documentation reproduced from package metacoder, version 0.1.2, License: GPL-2 | GPL-3

Community examples

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