taxon_data

(<code><a rd-options="" href="/link/taxmap?package=metacoder&version=0.1.2" data-mini-rdoc="metacoder::taxmap">taxmap</a></code>)

(<code>character</code>)
The taxon_ids of a subset of <code>obj</code>.
Default: All rows.

row_subset

(<code>character</code>)
The names of columns, either user defined or generated using <code>taxon_funcs</code>.
Default: All columns.

col_subset

(<code>logical</code> of length 1)
If <code>TRUE</code>, return calculated columns using  functions in <code><a rd-options="" href="/link/taxmap?package=metacoder&version=0.1.2" data-mini-rdoc="metacoder::taxmap">taxmap</a>$taxon_funcs</code>.
These values are calculated each time <code>taxon_data</code> is called since their values can change if 
the data is subset.

calculated_cols

(<code>character</code> of length 1)
The name of a column in <code>obj$taxon_data</code> or a function name in  <code>obj$taxon_funcs</code>.
This column will be used to sort the output rows.
If <code>NULL</code>, no sorting will be done.

sort_by

(<code>logical</code> of length 1)
If <code>TRUE</code>, <code>sort_by</code> order is decreasing.

decreasing

(<code>logical</code> of length 1)
If <code>TRUE</code>, if <code>subset</code> is a single column
name, then a <code>vector</code> is returned instead of a <code>data.frame</code>

drop


Return a table of data associated with taxa of and object of type
<code><a rd-options="" href="/link/taxmap?package=metacoder&version=0.1.2" data-mini-rdoc="metacoder::taxmap">taxmap</a></code>.


A set of tools for parsing, manipulating, and graphing data classified by a hierarchy (e.g. a taxonomy).

Zachary Foster

metacoder

Tools for Parsing, Manipulating, and Graphing Hierarchical Data

taxon_data function

(<code><a rd-options='' href='taxmap'>taxmap</a></code>)

(<code>logical</code> of length 1)
If <code>TRUE</code>, return calculated columns using  functions in <code><a rd-options='' href='taxmap'>taxmap</a>$taxon_funcs</code>.
These values are calculated each time <code>taxon_data</code> is called since their values can change if 
the data is subset.


Return a table of data associated with taxa of and object of type
<code><a rd-options='' href='taxmap'>taxmap</a></code>.


taxon_data: Return taxon data from `taxmap`

Description

Usage

Arguments

Value