unite_ex_data_1

0th

Percentile

Example of UNITE fungal ITS data

A dataset containing information from 449 sequences from the UNITE reference database.

Keywords
datasets
Usage
unite_ex_data_1
Format

An object of type taxmap

Source

https://unite.ut.ee/

Aliases
  • unite_ex_data_1
Examples
## Not run: 
# 
# file_path <- system.file("extdata", "unite_general_release.fasta", package = "metacoder")
# sequences <- ape::read.FASTA(file_path)
# unite_ex_data_1 <- extract_taxonomy(sequences[!grepl(pattern = "\\|UDB", names(sequences))],
#                                     regex = "^(.*)\\|(.*)\\|(.*)\\|.*\\|(.*)$",
#                                     key = c(name = "obs_info", "obs_id",
#                                             other_id = "obs_info", tax_string = "obs_info"),
#                                     database = "ncbi")
# ## End(Not run)

Documentation reproduced from package metacoder, version 0.1.2, License: GPL-2 | GPL-3

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