unite_ex_data_3

0th

Percentile

Example of UNITE fungal ITS data

A dataset containing information from 500 sequences from the UNITE reference database.

Keywords
datasets
Usage
unite_ex_data_3
Format

An object of type taxmap

Source

https://unite.ut.ee/

Aliases
  • unite_ex_data_3
Examples
## Not run: 
# 
# file_path <- system.file("extdata", "unite_general_release.fasta", package = "metacoder")
# sequences <- ape::read.FASTA(file_path)
# unite_ex_data_3 <- extract_taxonomy(sequences,
#                                     regex = "^(.*)\\|(.*)\\|(.*)\\|.*\\|(.*)$",
#                                     key = c(seq_name = "obs_info", seq_id = "obs_info",
#                                             other_id = "obs_info", "class"),
#                                     class_regex = "^(.*)__(.*)$",
#                                     class_key = c(unite_rank = "taxon_info", "name"),
#                                     class_sep = ";")
# ## End(Not run)

Documentation reproduced from package metacoder, version 0.1.2, License: GPL-2 | GPL-3

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