its1_ex_data

0th

Percentile

Example of ITS1 fungal data

A dataset containing information from 170 Chytridiomycota ITS sequences from the ITS1 reference database.

Keywords
datasets
Usage
its1_ex_data
Format

An object of type taxmap

Aliases
  • its1_ex_data
Examples
# NOT RUN {
file_path <- system.file("extdata", "its1_chytridiomycota_hmm.fasta", package = "metacoder")
sequences <- ape::read.FASTA(file_path)
its1_ex_data <- extract_taxonomy(sequences,
                                 regex = "^(.*)\\|(.*)\\|tax_id:(.*)\\|(.*)$",
                                 key = c("obs_id", taxon_name = "taxon_info",
                                         "taxon_id", description = "obs_info"),
                                 database = "ncbi")
# }
# NOT RUN {
# }
Documentation reproduced from package metacoder, version 0.1.3, License: GPL-2 | GPL-3

Community examples

Looks like there are no examples yet.