pr2_ex_data

0th

Percentile

Example of PR2 SSU data

A dataset containing information from 249 Stramenopile sequences from the PR2 reference database.

Keywords
datasets
Usage
pr2_ex_data
Format

An object of type taxmap

Aliases
  • pr2_ex_data
Examples
# NOT RUN {
file_path <- system.file("extdata", "pr2_stramenopiles_gb203.fasta", package = "metacoder")
sequences <- ape::read.FASTA(file_path)
pr2_ex_data <- extract_taxonomy(sequences,
                                regex = "^(.*\\..*?)\\|(.*)$",
                                key = c("obs_id", "class"),
                                class_sep = "\\|")
# }
# NOT RUN {
# }
Documentation reproduced from package metacoder, version 0.1.3, License: GPL-2 | GPL-3

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