rdp_ex_data

0th

Percentile

Example of RDP Archea data

A dataset containing information from 400 Archaea 16S sequences from the RDP reference database.

Keywords
datasets
Usage
rdp_ex_data
Format

An object of type taxmap

Aliases
  • rdp_ex_data
Examples
# NOT RUN {
file_path <- system.file("extdata", "rdp_current_Archaea_unaligned.fa", package = "metacoder")
sequences <- ape::read.FASTA(file_path)
rdp_ex_data <- extract_taxonomy(sequences,
                                regex = "^(.*?) (.*)\\tLineage=(.*)",
                                key = c(id = "obs_info", description = "obs_info", "class"),
                                class_regex = "(.+?);(.*?);",
                                class_key = c("name", "taxon_info"))
# }
# NOT RUN {
# }
Documentation reproduced from package metacoder, version 0.1.3, License: GPL-2 | GPL-3

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