silva_ex_data
From metacoder v0.1.3
by Zachary Foster
Example dataset from SILVA
https://www.arb-silva.de/
- Keywords
- datasets
Usage
silva_ex_data
Format
An object of type taxmap
Examples
# NOT RUN {
file_path <- system.file("extdata", "silva_nr99.fasta", package = "metacoder")
sequences <- ape::read.FASTA(file_path)
silva_ex_data <- extract_taxonomy(sequences,
regex = "^(.*?) (.*)$",
key = c(id = "obs_info", "class"),
class_sep = ";")
# }
# NOT RUN {
# }
Community examples
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