silva_ex_data

From metacoder v0.1.3 by Zachary Foster

Example dataset from SILVA

https://www.arb-silva.de/

Keywords: datasets

Usage

silva_ex_data

Format

An object of type taxmap

Examples

# NOT RUN {
file_path <- system.file("extdata", "silva_nr99.fasta", package = "metacoder")
sequences <- ape::read.FASTA(file_path)
silva_ex_data <- extract_taxonomy(sequences,
                                  regex = "^(.*?) (.*)$",
                                  key = c(id = "obs_info", "class"),
                                  class_sep = ";")
# }
# NOT RUN {
# }

Documentation reproduced from package metacoder, version 0.1.3, License: GPL-2 | GPL-3

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