metacoder (version 0.1.3)

unite_ex_data_1: Example of UNITE fungal ITS data

Description

A dataset containing information from 449 sequences from the UNITE reference database.

Usage

unite_ex_data_1

Format

An object of type taxmap

Examples

# NOT RUN {
file_path <- system.file("extdata", "unite_general_release.fasta", package = "metacoder")
sequences <- ape::read.FASTA(file_path)
unite_ex_data_1 <- extract_taxonomy(sequences[!grepl(pattern = "\\|UDB", names(sequences))],
                                    regex = "^(.*)\\|(.*)\\|(.*)\\|.*\\|(.*)$",
                                    key = c(name = "obs_info", "obs_id",
                                            other_id = "obs_info", tax_string = "obs_info"),
                                    database = "ncbi")
# }
# NOT RUN {
# }

Run the code above in your browser using DataCamp Workspace