unite_ex_data_2

0th

Percentile

Example of UNITE fungal ITS data

A dataset containing information from 500 sequences from the UNITE reference database.

Keywords
datasets
Usage
unite_ex_data_2
Format

An object of type taxmap

Aliases
  • unite_ex_data_2
Examples
# NOT RUN {
file_path <- system.file("extdata", "unite_general_release.fasta", package = "metacoder")
sequences <- ape::read.FASTA(file_path)
unite_ex_data_2 <- extract_taxonomy(sequences,
                                    regex = "^(.*)\\|(.*)\\|(.*)\\|.*\\|(.*)$",
                                    key = c(seq_name = "obs_info", seq_id = "obs_info",
                                            other_id = "obs_info", "class"),
                                    class_regex = "^(.*)__(.*)$",
                                    class_key = c(unite_rank = "taxon_info", "name"),
                                    class_sep = ";",
                                    database = "ncbi")
# }
# NOT RUN {
# }
Documentation reproduced from package metacoder, version 0.1.3, License: GPL-2 | GPL-3

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