metacoder (version 0.2.0)

parse_qiime_biom: Parse a BIOM output from QIIME

Description

Parses a file in BIOM format from QIIME into a taxmap object. I have not tested if it works with other BIOM files.

Usage

parse_qiime_biom(file)

Arguments

file

(character of length 1) The file path to the input file.

Value

A taxmap object

Details

This function was inspired by the tutorial created by Geoffrey Zahn at http://geoffreyzahn.com/getting-your-otu-table-into-r/.

See Also

Other parsers: parse_greengenes, parse_mothur_tax_summary, parse_mothur_taxonomy, parse_newick, parse_phyloseq, parse_phylo, parse_rdp, parse_silva_fasta, parse_unite_general