Converts the uBiome file format to taxmap. NOTE: This is experimental and might not work if uBiome changes their format. Contact the maintainers if you encounter problems/
parse_ubiome(file = NULL, table = NULL)
(character
of length 1) The file path to the input file.
Either "file", or "table" must be used, but only one.
(character
of length 1) An already parsed data.frame or
tibble. Either "file", or "table" must be used, but only one.
The input file has a format like:
tax_name,tax_rank,count,count_norm,taxon,parent root,root,29393,1011911,1, Bacteria,superkingdom,29047,1000000,2,131567 Campylobacter,genus,23,791,194,72294 Flavobacterium,genus,264,9088,237,49546
Other parsers: parse_edge_list
,
parse_greengenes
,
parse_mothur_tax_summary
,
parse_mothur_taxonomy
,
parse_newick
, parse_phyloseq
,
parse_phylo
,
parse_qiime_biom
, parse_rdp
,
parse_silva_fasta
,
parse_unite_general