hmp_otus

0th

Percentile

A HMP subset

A subset of the Human Microbiome Project abundance matrix produced by QIIME. It contains OTU ids, taxonomic lineages, and the read counts for 50 samples. See hmp_samples for the matching dataset of sample information.

Keywords
data
Details

The 50 samples were randomly selected such that there were 10 in each of 5 treatments: "Saliva", "Throat", "Stool", "Right_Antecubital_fossa", "Anterior_nares". For each treatment, there were 5 samples from men and 5 from women.

Format

A 1,000 x 52 tibble.

See Also

Other hmp_data: hmp_samples

Aliases
  • hmp_otus
Documentation reproduced from package metacoder, version 0.3.3, License: GPL-2 | GPL-3

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