make_dada2_asv_table

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Percentile

Make a imitation of the dada2 ASV abundance matrix

Attempts to save the abundance matrix stored as a table in a taxmap object in the dada2 ASV abundance matrix format. If the taxmap object was created using parse_dada2, then it should be able to replicate the format exactly with the default settings.

Usage
make_dada2_asv_table(obj, asv_table = "asv_table", asv_id = "asv_id")
Arguments
obj

A taxmap object

asv_table

The name of the abundance matrix in the taxmap object to use.

asv_id

The name of the column in asv_table with unique ASV ids or sequences.

Value

A numeric matrix with rows as samples and columns as ASVs

See Also

Other writers: make_dada2_tax_table, write_greengenes, write_mothur_taxonomy, write_rdp, write_silva_fasta, write_unite_general

Aliases
  • make_dada2_asv_table
Documentation reproduced from package metacoder, version 0.3.3, License: GPL-2 | GPL-3

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