Execute EMBOSS Primersearch
run_primersearch(
seq_path,
primer_path,
mismatch = 5,
output_path = tempfile(),
program_path = "primersearch",
...
)The command generated as a character vector of length 1.
A character vector of length 1. The path to the fasta file containing reference sequences to search for primer matches in.
A character vector of length 1. The path to the file containing primer pairs to match. The file should be whitespace-delimited with 3 columns: primer name, first primer sequence, and second primer sequence.
An integer vector of length 1. The percentage of mismatches allowed.
A character vector of length 1. Where the output of primersearch is saved.
A character vector of length 1. The location of the primersearch binary. Ideally, it should be in your system's search path.
Additional arguments are passed to primersearch.
parse_primersearch