metagene (version 1.0.0)

bootstrapAnalysis: Perform the bootstrap analysis

Description

This function wraps the diffentent steps needed to do a bootstrap analysis on a matrix.

Usage

bootstrapAnalysis( currentMatrix, binSize, alpha, sampleSize, cores=1)

Arguments

currentMatrix

The matrix to use for the bootstrap analysis

binSize

The number of nucleotides in each bin for the bootstrap step.

alpha

Confidence interval.

sampleSize

Number of time each bin will be resampled ( hould be at least 1000).

cores

Number of cores for parallel processing (require parallel package).

Value

bootstrapAnalysis returns a list with the mean of the bootstraped vector and the quartile of order alpha/2 and (1-alpha/2).

Examples

  ## Not run: metagene:::bootstrapAnalysis(matrix(1:40, nrow=4, ncol=10), 4, alpha=0.05, sampleSize=100)