prepareGroups

The name of the group of features
    in the current analysis.

featuresGroupsNames

bamFiles

A matrix explaining the relationship between
    multiple samples.
      * One line per samples.
      * One column per group of samples. For example, biological
        replicates and corresponding controls are in the same group.
          1: treatment file(s)
          2: control file(s)

design


  This function will initialize every groups in the main data
  structure.


This package produces metagene plots to compare the behavior of DNA-interacting proteins at selected groups of genes/features. Pre-calculated features (such as transcription start sites of protein coding gene or enhancer) are available. Bam files are used to increase the resolution. Multiple combination of group of features and or group of bam files can be compared in a single analysis. Bootstraping analysis is used to compare the groups and locate regions with statistically different enrichment profiles.

prepareGroups: Distribute the bam filenames in their respective groups.

Description

Usage

Arguments

Value