mgFeatures-class

Object contains taxonomic annotation and reference sequence data for
classified OTUs. The class extends the <a href="/link/AnnotatedDataFrame?package=metagenomeFeatures&version=1.2.2&to=Biobase" rd-options="Biobase" data-mini-rdoc="Biobase::AnnotatedDataFrame">AnnotatedDataFrame</a>
class with a slot with a subset of the reference database sequences and
phylogenetic tree for taxonomically classified OTUs, along with an additional
slot for metadata including information on the database source.

metagenomeFeatures was developed for use in exploring
    the taxonomic annotations for a marker-gene metagenomic sequence
    dataset. The package can be used to explore the taxonomic
    composition of a marker-gene database or annotated sequences from a
    marker-gene metagenome experiment.

Nathan D Olson

metagenomeFeatures

Exploration of marker-gene sequence taxonomic annotations

mgFeatures-class function

Object contains taxonomic annotation and reference sequence data for
classified OTUs. The class extends the <a href="AnnotatedDataFrame" rd-options="Biobase">AnnotatedDataFrame</a>
class with a slot with a subset of the reference database sequences and
phylogenetic tree for taxonomically classified OTUs, along with an additional
slot for metadata including information on the database source.

Data engineering and BI courses are free!

mgFeatures-class: mgFeature-class object

Description

Arguments

Value

Examples