msd16s_query_df

Example <code>query_df</code> for use in generating a
<a href="/link/metagenomeAnnotation-class?package=metagenomeFeatures&version=1.2.2" rd-options="" data-mini-rdoc="metagenomeFeatures::metagenomeAnnotation-class">metagenomeAnnotation-class</a> object using the <a href="/link/annotate?package=metagenomeFeatures&version=1.2.2" rd-options="" data-mini-rdoc="metagenomeFeatures::annotate">annotate</a>
<a href="/link/MgDb-class?package=metagenomeFeatures&version=1.2.2&to=%3DMgDb" rd-options="=MgDb" data-mini-rdoc="=MgDb::MgDb-class">MgDb-class</a> method.  The dataset contains the msd16s OTU ids and
Greengenes database version 13.5 ids. Specifically, the OTU centers came from
'Healthy and moderate to severe diarrhea 16S expression data' - bioconductor
dataset 'msd16s'.

datasets

metagenomeFeatures was developed for use in exploring
    the taxonomic annotations for a marker-gene metagenomic sequence
    dataset. The package can be used to explore the taxonomic
    composition of a marker-gene database or annotated sequences from a
    marker-gene metagenome experiment.

Nathan D Olson

metagenomeFeatures

Exploration of marker-gene sequence taxonomic annotations

msd16s_query_df function

format

<url>http://bioconductor.org/packages/release/data/experiment/html/msd16s.html</url>

source

Example <code>query_df</code> for use in generating a
<a href="metagenomeAnnotation-class" rd-options="">metagenomeAnnotation-class</a> object using the <a href="annotate" rd-options="">annotate</a>
<a href="MgDb-class" rd-options="=MgDb">MgDb-class</a> method.  The dataset contains the msd16s OTU ids and
Greengenes database version 13.5 ids. Specifically, the OTU centers came from
'Healthy and moderate to severe diarrhea 16S expression data' - bioconductor
dataset 'msd16s'.

msd16s_query_df: Example Query Data Frame

Description

Usage

Arguments

format

source

Examples