filterData

Features with at least 'present' postive samples.

present

Sampls with at least this much depth of coverage

depth


Filter the data based on the number of present features after filtering samples by depth of coverage.
There are many ways to filter the object, this is just one way.


metagenomeSeq is designed to determine features (be it
Operational Taxanomic Unit (OTU), species, etc.) that are
differentially abundant between two or more groups of multiple
samples. metagenomeSeq is designed to address the effects of
both normalization and under-sampling of microbial communities
on disease association detection and the testing of feature
correlations.

filterData: Filter datasets according to no. features present in features with at least a certain depth.

Description

Usage

Arguments

Value

Examples