metamicrobiomeR (version 1.2)

taxtab6: Taxonomic relative abundance data.

Description

Monthly longitudinal relative abundance data from phylum to genus level of 50 infants from birth to 2 year of life. Mapping file is merged to the data for ready use.

Usage

data(taxtab6)

Format

A data frame with 322 row (samples) and 803 variables (including mapping varilable and bacterial taxonomies from phylum to genus level).

References

Subramanian et al. Nature. 2014 Jun 19; 510(7505): 417<U+2013>421. (PubMed)

Examples

# NOT RUN {
#Load summary tables of bacterial taxa relative abundance from Bangladesh data
data(taxtab6)
tab6<-as.data.frame(taxtab6)
tl<-colnames(taxtab6)[grep("k__bacteria.p__fusobacteria",colnames(taxtab6))]
taxacom.ex<-taxa.compare(taxtab=tab6[,c("personid","x.sampleid","bf","age.sample",tl)],
propmed.rel="gamlss",comvar="bf",adjustvar="age.sample",
longitudinal="yes",p.adjust.method="fdr")
# }