normalize_quantile_all

This is the standard approach for Quantile Normalization. Other sub-flavors are also available:<ul>
<li><code>normalize_quantile_group</code></li>
<li><code>normalize_quantile_batch</code></li>
<li><code>normalize_quantile_smooth</code></li>
</ul>See References for more information.

Facilitate tasks typically encountered during metabolomics data analysis including data import, filtering, missing value imputation (Stacklies et al. (2007) <doi:10.1093/bioinformatics/btm069>, Stekhoven et al. (2012) <doi:10.1093/bioinformatics/btr597>, Tibshirani et al. (2017) <doi:10.18129/B9.BIOC.IMPUTE>, Troyanskaya et al. (2001) <doi:10.1093/bioinformatics/17.6.520>), normalization (Bolstad et al. (2003) <doi:10.1093/bioinformatics/19.2.185>, Dieterle et al. (2006) <doi:10.1021/ac051632c>, Zhao et al. (2020) <doi:10.1038/s41598-020-72664-6>) transformation, centering and scaling (Van Den Berg et al. (2006) <doi:10.1186/1471-2164-7-142>) as well as statistical tests and plotting. 'metamorphr' introduces a tidy (Wickham et al. (2019) <doi:10.21105/joss.01686>) format for metabolomics data and is designed to make it easier to build elaborate analysis workflows and to integrate them with 'tidyverse' packages including 'dplyr' and 'ggplot2'.

Yannik Schermer

metamorphr

Tidy and Streamlined Metabolomics Data Workflows

normalize_quantile_all function

<dl><dt>data</dt>
<dd>A tidy tibble created by <code>read_featuretable</code>.</dd></dl>

Arguments

This is the standard approach for Quantile Normalization. Other sub-flavors are also available:<ul>
<li><code>normalize_quantile_group</code></li>
<li><code>normalize_quantile_batch</code></li>
<li><code>normalize_quantile_smooth</code></li>
</ul>

See References for more information.

Normalize intensities across samples using standard Quantile Normalization — normalize_quantile_all

<dl>

<dt>data</dt>
<dd>A tidy tibble created by <code>read_featuretable</code>.</dd>

</dl>

normalize_quantile_all: Normalize intensities across samples using standard Quantile Normalization

Description

Usage

Value

Arguments

References

Examples