get.gc.content

a data frame which can be converted to a 
    GRanges object, that means it has at least the 
    chromosome, start, end fields. Preferably, the output 
    of <code>link{get.ucsc.annotation}</code>.

Returns a named numeric vector (names are the 
    genomic region names, e.g. genes) given a data 
    frame which can be converted to a GRanges object 
    (e.g. it has at least chromosome, start, end 
    fields). This function works best when the input
    annotation data frame has been retrieved using one 
    of the SQL queries generated from 
    <code><a href="/link/get.ucsc.query?package=metaseqR&version=1.12.2" rd-options="" data-mini-rdoc="metaseqR::get.ucsc.query">get.ucsc.query</a></code>, used in 
    <code><a href="/link/get.ucsc.annotation?package=metaseqR&version=1.12.2" rd-options="" data-mini-rdoc="metaseqR::get.ucsc.annotation">get.ucsc.annotation</a></code>.

Provides an interface to several normalization and
    statistical testing packages for RNA-Seq gene expression data.
    Additionally, it creates several diagnostic plots, performs
    meta-analysis by combinining the results of several statistical
    tests and reports the results in an interactive way.

Panagiotis Moulos

metaseqR

An R package for the analysis and result reporting
    of RNA-Seq data by combining multiple statistical
    algorithms.

get.gc.content function

Returns a named numeric vector (names are the 
    genomic region names, e.g. genes) given a data 
    frame which can be converted to a GRanges object 
    (e.g. it has at least chromosome, start, end 
    fields). This function works best when the input
    annotation data frame has been retrieved using one 
    of the SQL queries generated from 
    <code><a href="get.ucsc.query" rd-options="">get.ucsc.query</a></code>, used in 
    <code><a href="get.ucsc.annotation" rd-options="">get.ucsc.annotation</a></code>.

get.gc.content: Return a named vector of GC-content for each genomic region

Description

Usage

Arguments

Value

Examples