get.preset.opts

preset can be one of <code>"all.basic"</code>,
    <code>"all.normal"</code>, <code>"all.full"</code>,
    <code>"medium.basic"</code>, <code>"medium.normal"</code>,

preset

one of the supported organisms. See
    <code><a href="/link/metaseqr?package=metaseqR&version=1.12.2" rd-options="" data-mini-rdoc="metaseqR::metaseqr">metaseqr</a></code> main help page.
    <code>"medium.full"</code>, <code>"strict.basic"</code>,
    <code>"strict.normal"</code> or <code>"strict.full"</code>, each of
    which control the strictness of the analysis and the
    amount of data to be exported. For an explanation of the
    presets, see the main <code><a href="/link/metaseqr?package=metaseqR&version=1.12.2" rd-options="" data-mini-rdoc="metaseqR::metaseqr">metaseqr</a></code> help page.

This is a helper function which returns a set of metaseqr
    pipeline options, grouped together according to a preset
    keyword. It is intended mostly for internal use.

Provides an interface to several normalization and
    statistical testing packages for RNA-Seq gene expression data.
    Additionally, it creates several diagnostic plots, performs
    meta-analysis by combinining the results of several statistical
    tests and reports the results in an interactive way.

Panagiotis Moulos

metaseqR

An R package for the analysis and result reporting
    of RNA-Seq data by combining multiple statistical
    algorithms.

get.preset.opts function

one of the supported organisms. See
    <code><a href="metaseqr" rd-options="">metaseqr</a></code> main help page.
    <code>"medium.full"</code>, <code>"strict.basic"</code>,
    <code>"strict.normal"</code> or <code>"strict.full"</code>, each of
    which control the strictness of the analysis and the
    amount of data to be exported. For an explanation of the
    presets, see the main <code><a href="metaseqr" rd-options="">metaseqr</a></code> help page.

get.preset.opts: Return several analysis options given an analysis preset

Description

Usage

Arguments

Value

Examples